FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007942388

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942388
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences504662
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG46130.9140771447027912No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT39800.7886466585556273No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC17760.3519187099484407No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11300.22391224225323086No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11230.2225251752658215No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10270.2035025422956355No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9450.1872540433002683No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7090.14049007058189442No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6810.13494180263225683No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6540.12959168710939203No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6030.11948591334398073No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5680.11255057840693374No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5310.10521893861634123No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5260.10422817648247737No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5140.10185034736120413No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)