FastQCFastQC Report
Wed 31 May 2023
EGAF00007942390

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942390
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences509490
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG46940.9213134703330782No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT41510.8147363049323835No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC17390.34132171387073346No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11440.22453826375395No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10960.2151170778621759No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10760.21119158374060337No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9620.1888162672476398No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7500.14720602955897072No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6730.1320928771909164No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6650.13052267954228738No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6610.12973758071797287No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5850.11482070305599718No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5130.10068892421833599No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)