FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942391

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942391
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences493880
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC21770.4407953348991658No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT20470.4144731513728031No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC19890.402729407953349No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA18190.3683080910342593No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT15880.32153559569126106No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC15630.3164736373208067No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA14390.29136632380335303No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA14140.28630436543289867No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT13830.2800275370535353No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12440.25188304851380905No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT12040.24378391512108205No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG10870.22009394994735565No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA10100.2045031181663562No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT9960.20166842147890177No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC9690.19620150643881104No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCTTTT8980.18182554466672066No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCGGGG7940.16076779784563053No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC7870.1593504495019033No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7570.15327609945735807No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG7350.14882157609135824No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT7010.1419373127075403No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT6860.13890013768526768No Hit
AACGGTGACGCTAGACTGTTCGGAAGGACCCGGACGTTCTGGAG6320.12796630760508626No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG6300.1275613509354499No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA6100.1235117842390864No Hit
GGTCAGGATGGTGCTACGGCGGCCTTTACGCTTGCGTTCCATAG5690.11521017251154125No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5590.11318538916335952No Hit
CTGGGAGGTCAGGAACACCAGGTAGCTGCGCTGAGCTTCACGGA5530.11197051915445048No Hit
ACGGCGGAAGGCATACGGGTTGTCTTCGTCTGGCGCATCAATAT5410.10954077913663239No Hit
TTCCATCGGCTGCTGCGGGCTTACCTGGGTCAGCTGCGGTGGCT5350.10832590912772334No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5050.1022515590831781No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)