FastQCFastQC Report
Sun 21 May 2023
EGAF00007942392

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942392
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences493880
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG45850.9283631651413299No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA43890.8886774115169678No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC29460.5965011743743419No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA22340.45233659998380177No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA20860.4223698064307119No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA19440.39361788288653116No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT15990.32376285737426097No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG15920.32234550903053377No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT14700.2976431521827165No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13890.28124240706244436No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12690.25694500688426336No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT12420.2514780918441727No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12370.2504657001700818No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC10770.21806916659917389No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG10730.2172592532599012No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA9050.18324289301044788No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC8650.17514375961772088No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8250.16704462622499394No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT7910.160160362841176No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG7810.15813557949299423No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7740.15671823114926703No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC7480.15145379444399448No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7280.147404227747631No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6950.14072244269863124No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6360.12877622094435895No Hit
ATGGGTTCCATTTTCAAACCGAAAATGCCAC5670.11480521584190492No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC5650.11440025917226856No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5590.11318538916335952No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5510.11156556248481413No Hit
GACGCTAACGGCAACAACCTGACTTTCGAAC5320.10771847412326882No Hit
TGGCGCCCTGCCCCGTGGACCCCGAACCCGC5260.10650360411435976No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)