FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007942393

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942393
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences507654
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14990.2952798559648895No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA14250.2807029984989776No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA13300.2619894652657125No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9060.17846801167724474No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5950.11720581340834506No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5800.11425104500309266No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5630.11090230747713993No Hit
GTACAGACCGACACGTGGGCGTGGGAACGCACGCGGCAGCGGAG5380.10597769346838595No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG5300.10440181698558466No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)