FastQCFastQC Report
Sun 21 May 2023
EGAF00007942394

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942394
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences507654
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT32600.6421696667415209No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14790.29134016475788627No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9710.1912720081000051No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9300.18319564112564857No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6400.12607011862410225No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6120.12055455093429776No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5890.1160239060462441No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5810.11444802956344283No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5430.10696261627013676No Hit
GTGGAAGCAAGCGGTCACATCCTGATCTCCG5320.10479578610628498No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5190.1022349868217329No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5090.10026514121823132No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5080.10006815665788117No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)