FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942397

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942397
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences500252
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG7080.14152866955054652No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT5250.10494710665824425No Hit
AGTCACGTTACGAGAAGAGGTGGTTTTGCTGGAGGCCGGCTGCG5200.10394761040435621No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5170.1033479126520234No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)