FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942398

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942398
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences500252
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10630.21249290357659736No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT7000.13992947554432567No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6190.1237376362313394No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT5660.11314297594012616No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5620.11234337893701574No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC5370.10734589766757555No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5100.10194861789658012No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)