FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942400

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942400
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences487723
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC24710.5066400395306352No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA23190.47547480844659773No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG18840.3862848379100432No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT14470.2966847985434355No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13740.28171728624649645No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12460.2554728811230965No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10130.20769986242190752No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9050.1855561455990388No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8910.18268566378866694No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8660.17755980341300287No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8130.16669297941659508No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7340.15049526062949667No Hit
CACGAAGCTCCGAACATGACCCAGACCGGTA6900.1414737463683279No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6740.13819319572790292No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6320.1295817502967873No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5870.12035520162059202No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5830.11953506396048577No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5820.1193300295454592No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5660.11604947890503423No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5410.11092361852937016No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5040.10333734517338736No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG4980.10210713868322799No Hit
CACACCCCTCCGATGCCGTCTATCGGTCTGG4910.10067189777804204No Hit

[OK]Adapter Content

Adapter graph