FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942401

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942401
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences488439
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC28840.5904524413488685No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT23120.47334467558896814No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA18640.3816239080007944No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA18390.3765055615952043No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA17130.3507090957110305No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13810.28273745544479456No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT13640.2792569798889933No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG13220.270658157927602No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA12190.249570570736571No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT11580.23708180550693125No Hit
GTGCGGGTAGATCGGCAGGTTGCCCAGCAGAGTGCCGTCGAAGT11180.22889245125798716No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT8960.1834415351763475No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT7620.15600719844238484No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC7290.14925098118700597No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC7260.14863677961833513No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG7200.14740837648099353No Hit
CTGACCAACACCGGAGAAGTCGCCAACGCCTTTGTTAGCAGAGG7110.14556577177498112No Hit
CGGCGGCAGCGGCAGGCCTGCGCGGTTGGTCAGGCTACCGCTGA6830.13983322380072025No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA5600.11465095948521718No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA5380.11014681464829794No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5270.10789474222983832No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)