FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942402

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942402
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences488439
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC38230.782697532342831No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG23870.48869971480573826No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT20670.42318488081418565No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG19960.40864877702230984No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA19870.40680617231629745No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC14580.29850196237401194No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13870.28396585858213613No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG13710.2806901168825585No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG13550.27741437518298084No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT12960.26533507766578834No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC11820.2419954180562977No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC9250.18937881700683196No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9090.18610307530725434No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT9080.18589834145103074No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG8850.1811894627578879No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC8630.17668531792096864No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC7930.1623539479853165No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7860.1609208109917513No Hit
ACTAGCCCGGAAGAACCGATCTACACCCAGG7660.15682613386727923No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG7610.1558024645861612No Hit
TTCATCTCTGGTACCGACGGTCTGCTGCCAG6990.1431089655002979No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5830.11935983817836003No Hit
GTGAACGCAAAAATTGATCGCCTGAACCAGA5700.11669829804745321No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT5530.11321782249165198No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC5340.10932787922340353No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5110.10461900053026069No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4920.10072905726201224No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)