FastQCFastQC Report
Sun 21 May 2023
EGAF00007942403

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942403
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences447203
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT14120.3157402790231729No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG11670.2609553155949312No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10080.22540099239048036No Hit
CTGCACAGAGTCTTTGATAACAATCTGATCGAAACGTGGTACGT9910.22159958676484728No Hit
CGCCTGCGGGCACGGACGACCGTGAATGGACAGATCCAGTGCTT9100.2034870070191837No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG8920.19946198929792508No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA7720.1726285378228679No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA7160.16010626046784124No Hit
GCTAGAGTTGGAAGTGGTGCGGGAGCTGGAGCCACCAGAGGAAG7140.15965903627659028No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG6950.15541040645970622No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG6930.15496318226845526No Hit
TCATTTGAAACGCTGCATCTGGACGCCCATACGTTTCTGGTAGG6880.1538451217903279No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT6600.14758398311281454No Hit
CTGCATCTGCACACCCATACGTTTCTGGTAGGCTTGCAGGTTCT6510.14557147425218525No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6160.13774505090529357No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC6080.13595615414028975No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5950.13304919689715855No Hit
CATACGGTCCAGGTCTTCGGTCGCGGAGCGAGCACGGGTGCTGG5940.1328255848015331No Hit
AGGCGGGATGGCGATGAAGGACGCGTGCGGGCGCGGACGACGCG5920.13237836061028213No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5580.12477554935901593No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5520.12343387678526306No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG5500.12298665259401212No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5350.11963247115962997No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG5220.11672551391649878No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5050.11292410829086567No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT4610.10308517608334469No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG4540.10151989141396636No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG4520.1010726672227154No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)