FastQCFastQC Report
Wed 31 May 2023
EGAF00007942404

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942404
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences447203
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42630.9532583636514066No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT14560.3255792112306939No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA13820.3090319161544086No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA13700.30634857100690294No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC12690.2837637493487298No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG11320.25312889224803947No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG11230.2511163833874102No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9870.22070513838234537No Hit
GCTATCAACACCGTCACCACCAACGCCAATA9750.21802179323483967No Hit
CACCCAGGTGTGCCGGTCTCTCCAGCCGTTA9200.20572312797543846No Hit
GGTGCCCCGCGTGGCTCTCCAGCAACCCCGA7590.1697215805797367No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC7500.16770907171910743No Hit
AGCGAACAGGCAGCGGAAGCGATGGAAGTTG7100.15876458789408837No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7020.15697569112908455No Hit
GCAGAAGCGATGGAAGTGGCGAACAAAACCC6930.15496318226845526No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6550.14646592263468713No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6070.13573254204466428No Hit
ATGTCTTCTCGCCGCCGTAGCTCTTCCCGTC6010.13439086947091142No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5840.1305894638452783No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5810.1299186275584019No Hit
GTGTCCCCGAACCGTCAATTCATTCCATACC5780.12924779127152544No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5700.12745889450652165No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5370.12007969535088094No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5270.11784357439462616No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5070.11337133248211662No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA5030.11247688409961472No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG4940.11046437523898542No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4940.11046437523898542No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT4870.10889909056960709No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4690.10487407284834852No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC4660.10420323656147208No Hit
GCAGCCGAAGCGATGGAAGTCGCTTCCCAGG4580.10241433979646826No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)