FastQCFastQC Report
Wed 31 May 2023
EGAF00007942407

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942407
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences472125
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14250.3018268467037331No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG10770.22811755361397934No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT9280.19655811490601008No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG8680.18384961609743183No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC8650.1832141911570029No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT7680.16266878474980145No Hit
CAGAGCGAAAGTAATGTTTTTGCCATCACGCTTAACCTTCAGGT6990.14805401111993646No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG6510.13788721207307386No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA6230.13195657929573737No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG5730.12136616362192217No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5700.12073073868149324No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC5550.11755361397934869No Hit
TGGATCGTTCAGGTCACGGATAGTGGCCTTGGACGTAGCCGGAG4970.10526873179772306No Hit
CGCATCAATAACAGCTACAACGGTACCAGCGCCTTTACCTGCCT4760.10082075721472067No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)