FastQCFastQC Report
Sun 21 May 2023
EGAF00007942408

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942408
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences472125
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA19340.4096372782631718No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13880.2939899391051099No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11590.24548583531903626No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG11460.24273232724384433No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10830.2293884034948372No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9600.2033359809372518No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA8220.17410643367752185No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8090.1713529256023299No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7300.15462006883770188No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGG7100.1503839025681758No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6650.14085252846174212No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC6300.13343923749007147No Hit
ACTCCGTCTGACGCAGGCGAAACGGTCGCGG6040.12793222133968757No Hit
TCCTACACCAACGGCAAACTGACTATCACCC5710.12094254699496956No Hit
GTTGAAACCCCGCAGCCGACCGCTGTATCCG5240.11098755626158326No Hit
CTGACTTCTATTACTCTGGGCGGTACCACCA4880.10336245697643633No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4880.10336245697643633No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)