FastQCFastQC Report
Sun 21 May 2023
EGAF00007942409

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942409
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences527431
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA27360.5187408400340519No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA22350.42375211165062343No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT17990.3410872701832088No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG16790.3183354789536451No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC16500.3128371294065006No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG13060.24761532788175133No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG13060.24761532788175133No Hit
GTAAGCCAGTACCGCGCGACGGTTTTTGGAGTATGCCGCTTCGT12970.24590894353953408No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC10980.20817888975050766No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC10680.20249094194311673No Hit
GTATGCCAGTACCGCACGACGGTTTTTGGAGTAGGCAGCTTCAT10450.19813018195745039No Hit
CTGGACGGAAACAGAACGACGGCTACGTTTGGAGTGGCGGGTAC9990.1894086619861176No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG9290.17613678376887212No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA8940.1695008446602494No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG8930.16931124640000303No Hit
CGGGCTCGGTGGGTGACGATGGTGGGTGGAAACGCCACGACGAC8800.1668464690168003No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8500.16115852120940938No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC7950.15073061689585937No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAGAGG7900.14978262559462754No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG7420.14068190910280207No Hit
CCAAACTTCGTCGGCCGCATCACGAGAAGCGGTCTGAGTGACGG7300.1384067299798457No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7220.1368899438978748No Hit
GGTGGTACGGGTGGAAGAGGAGCGCGCGCTCGGCAGGCTGACGG7130.13518355955565753No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7010.13290838043270115No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA6470.1226700743793975No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC5900.11186297354535475No Hit
GTTACGTTCGAAACGAATCAGATCGGTACCCTGCGCCATAGAGC5650.10712301703919565No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5640.10693341877894928No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG5480.10389984661500747No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)