FastQCFastQC Report
Wed 31 May 2023
EGAF00007942410

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942410
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences527431
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT56511.071419768652203No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA38700.7337452671534286No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC18230.34563762842912155No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA16960.3215586493778333No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG16950.32136905111758696No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG16160.3063907885581242No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15070.2857245781912705No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA14850.28155341646585047No Hit
GCACTGGGCCAGCGTCGTGCCGATGCAGTTA13160.249511310484215No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG12720.24116898703337497No Hit
GCGCTGGGCCAGCGTCGCGCTGACGCAGTTA10630.2015429506418849No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC10360.1964237976152331No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10110.191683841109074No Hit
ATGTGCGAAGACACCATCACCTACGAATGTC9970.1890294654656249No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC9160.1736720063856694No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8740.16570887945532212No Hit
GCGGACGAAGAGGAAGAGGAACTGCTGGCGC8690.16476088815409032No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA8070.15300579601881573No Hit
TCCGAACCAGAAATCACTGAACACCGTGACC7860.14902423255364208No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7790.14769704473191753No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7790.14769704473191753No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCAT7510.14238829344501935No Hit
GCAGCTCACTCCCGTTCCGGCTCCGTGAGCC6310.11963650221545566No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6270.11887810917447023No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5980.11337975962732566No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)