FastQCFastQC Report
Wed 31 May 2023
EGAF00007942411

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942411
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences472447
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC12780.27050653300793526No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11070.23431199690123972No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA9150.19367251776389732No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8360.17695106541051167No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA8270.17504608982594874No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7750.16403956422625182No Hit
GACCGGCCATTCCGGGGTGCGCGGACGTGGACGACCGTGAATAG7080.14985807931895007No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6290.13313662696556441No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA6270.13271329905788373No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5640.11937846996594326No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA5490.1162035106583384No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA5230.11070024785848995No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT4800.10159869784335598No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)