FastQCFastQC Report
Sun 21 May 2023
EGAF00007942412

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942412
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences472447
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16530.34988051569805717No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT13400.28362969814603545No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11240.23791028411652526No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9720.20573736313279586No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9370.1983291247483845No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8900.18838091891788922No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8850.18732259914868757No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8490.17970269681043588No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA7980.1689078351645793No Hit
ACTAGCGAACCGTGCGAAGCGCTGGACCTGT7660.1621345886416889No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6500.1375815699962112No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6080.12869168393491756No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC5020.10625530482784314No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4990.10562031296632216No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4950.10477365715096086No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4810.1018103617971963No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA4760.10075204202799468No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)