FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942414

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942414
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences425922
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40680.9551044557454181No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT39010.9158953986880226No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA12950.3040462807744141No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9830.23079343166119617No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8390.19698442437817254No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC8250.1936974375589897No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6680.15683622822958193No Hit
ATGTGCGAAGACACCATCACCTACGAATGTC6090.1429839266344542No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA4970.11668803208099135No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4920.11551410821699748No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4830.1134010452618085No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA4390.1030705152586624No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)