FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007942415

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942415
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences474438
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG30090.6342240714276681No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT25780.5433797461417509No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC24960.5260961390107874No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG22760.47972548573259305No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC19100.4025815807334151No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT18500.3899350389302712No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG16650.35094153503724407No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG16520.3482014509798962No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG13280.279910125242919No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA12910.2721114244643136No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC11420.2407058456531728No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA10670.22489766839924288No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7610.16040030520320883No Hit
GGTCAGTGGATCCAGTTCGCCGCGTGCTGCACGAGCGGTCAGGT6790.14311669807224547No Hit
AGATTCAACATCCGTTTCGCTACCGTTGAAGTGCATGTAGGTGG6740.14206281958865014No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG6700.1412197168017739No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG6480.13658265147395446No Hit
GATTTCCGGGGTTTTGACAGAACGCAGCAGGTCAGCGATGGCCG5660.11929904434299107No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5150.10854948381031873No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT4760.10032923163827519No Hit

[OK]Adapter Content

Adapter graph