FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942416

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942416
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences474438
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA56981.2009999199052352No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC33410.7042016027383978No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG31070.6548800897061365No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG30940.6521400056487886No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA27100.5712021381086676No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA25270.5326301856090785No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC19870.41881130938078315No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18450.38888116044667587No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT10820.2280593038500289No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8950.18864424856356363No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7990.16840978167853335No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG7270.15323393151476064No Hit
CTGGAAGAGGTCATCGTAGAAAAAACCAAAC7210.15196927733444623No Hit
TCCGCGGCCGAAAAAACCAAAGGTAACGCGA7170.15112617454756996No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCTG6780.1429059223755264No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG6690.14100894110505482No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA6350.1338425674166066No Hit
GAACTGCTGATGAAGGACCCGAACTACCAGC5440.11466197901517164No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5200.10960336229391406No Hit
TGCCCGGACTTCAAGCTGCGTCTGATGAAGG5120.10791715672016154No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC4820.10159388581858957No Hit
GACGCCGCGTCCAGCAGCTCTGCAGGTCAGT4760.10032923163827519No Hit

[OK]Adapter Content

Adapter graph