FastQCFastQC Report
Sun 21 May 2023
EGAF00007942417

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942417
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences477408
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG8390.17574066626449494No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA6760.14159796232991487No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6320.13238152691199143No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG6310.13217206247067498No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6070.12714491587908036No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG5660.11855687378510625No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG5390.1129013338695623No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG5390.1129013338695623No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5150.10787418727796769No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG5110.10703632951270191No Hit
CTGGCAGCCGTAGAAGACACCGTTTTCGGTCTGGCCGTTAATCT5060.10598900730611971No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG5010.1049416850995375No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG4790.10033346739057579No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)