FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942418

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942418
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences477408
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43560.9124271063744218No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT15300.32048059521415645No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG8520.1784637040016087No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC7790.16317279978550842No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA7510.15730779542864803No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6380.1336383135598901No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG6300.13196259802935853No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC6180.12944902473356124No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6030.1263070581138146No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5940.12442187814196662No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5860.12274616261143509No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5800.12148937596353643No Hit
GGTTATATCCGTCAGGCCACCGGTTACACTC5560.11646222937194183No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG5280.11059722501508143No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5140.10766472283665125No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)