FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942420

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942420
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences489418
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA15040.3073037771393778No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9850.2012594551079037No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7590.1550821588090344No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6230.12729405130175023No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5240.10706594363100663No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5140.1050227004319416No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)