FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942421

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942421
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences420171
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG20400.4855166110940546No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG17440.4150691028176623No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG17180.40888114600960085No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15750.3748473835652627No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT14160.33700564770057906No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG11600.27607807297505066No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT11380.27084210952207555No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG10990.26156017430998335No Hit
TTCAACGACAGCAGCAGAGTGCAGCACACCACGCAGCGGCAGGC9890.23538035704510782No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA9050.21538849658829384No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA8860.2108665281516335No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT8020.1908746676948195No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTTCAA7160.17040681056046228No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC6480.1542229235239938No Hit
AATACCGCGGCCCTGGTTGTACACGCCGTGGTGTTCATGTGCGT6130.14589298166698797No Hit
GATGCGATGCGGGGAGTCGCAGATACGACCGGTAGAGCTGGACT5140.12233114612860002No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5100.12137915277351365No Hit
CTGAGACAGGGAGGCAGCTTCCAGTGCACGCAGGGTAGCCAGCA4670.11114522420633505No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG4530.1078132474635327No Hit
GTAATCGTTGCGTGGCCAGATGTACGGAGAGTTGTGGTCGTATG4480.10662325576967474No Hit
AGATTCAACATCCGTTTCGCTACCGTTGAAGTGCATGTAGGTGG4400.10471926905950198No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC4210.10019730062284166No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)