FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942422

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942422
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences420171
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41020.9762691856410842No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC22460.5345442688810033No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG21850.5200263702159359No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG20790.4947985463061468No Hit
ATGTCCAACATGGACATCGATGGTATTAACA17040.4055491692667985No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15580.3708014118061456No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA14330.34105161945969614No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC12920.3074938536929012No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA11070.2634641610201561No Hit
AAAGCACGTCAGACTATCGAAGGCCTGCGCG10340.2460902822898296No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT9110.2168164866209234No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG8730.20777254974760276No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG7360.1751667773358942No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG6830.16255286538099964No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG6470.1539849251852222No Hit
CTGGACACCAACTCCGTTTATGAACCGTACT6420.15279493349136425No Hit
ATGTTCGAGGAACCGGAATGGGCTGAAGCGG5810.1382770348262969No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG5310.12637711788771713No Hit
GGTAACGATAATTCTACTGCAACTCTGTGTC5120.12185514945105684No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5100.12137915277351365No Hit
TACGACGACTTCCATACCGATGAAGATAAAC4760.11328720925527941No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCTG4640.11043122919002024No Hit
CTGGGCCATCACGCAGTGCCGAACGGTACCC4610.10971723417370546No Hit
CTGGAAGAGGTCATCGTAGAAAAAACCAAAC4460.10614725909213153No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG4350.10352927736564399No Hit
GAACTGGCTCGCCGTCAACAGGAAGAACGTA4340.10329127902687239No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG4240.10091129563915643No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)