FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942425

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942425
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences446583
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AACACGCGGTACCGGGCGCGGGGTACGCGGTTTCTTAGTCGGAC17760.39768643230933554No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12540.2807988660562538No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG12180.272737654590524No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG11720.2624372177176471No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT7890.1766748846239109No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7830.1753313493796226No Hit
GAAAGTATCATCCGCCGCTTCGTTAGCGGTGCCGCCTTGAGACT6790.15204340514529213No Hit
CAGACGTGGTTTGGTGGACGGTTTGTTAGTCTGGGTAGAAGTAG6430.14398219367956236No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6380.14286258097598878No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC5950.133233911725256No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG5820.13032291869596468No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG5780.12942722853310581No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5500.12315739739309378No Hit
GCGGAAGGCATCGGAGTCATAGCGACGCTTGTCCTGTGCGATGT5100.11420049576450514No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)