FastQCFastQC Report
Wed 31 May 2023
EGAF00007942426

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942426
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences446583
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42070.94204212878681No Hit
GGTTACGTCGAACCGACTGCAGTTGCTACTC16880.37798124872644057No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12420.27811179556767723No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG11830.26490036566550895No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG11230.251465013222626No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG7830.1753313493796226No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7830.1753313493796226No Hit
GACATGCCATCCTCTGACTTCGACCCGTACG7270.16279168709959851No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6820.1527151727674363No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6340.1419668908131299No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6330.14174296827241523No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6260.1401755104874122No Hit
ACCTACCTGACGCAGGTACCGCCGGAACGTG6150.13771236253955033No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6070.1359209822138326No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG5180.11599187609022286No Hit
GAAAAACAGCGTAAACAAAAAGATCTGATTA5170.11576795354950814No Hit
ACTACTACCACTCGTCGTCCGACCAAAAAAC4900.10972204495021082No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)