FastQCFastQC Report
Sun 21 May 2023
EGAF00007942428

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942428
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences394113
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG37660.9555635058980546No Hit
AAACTGTCCTCTGGCTACCGCATCAACCGTG14400.36537744251014304No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13780.34964591373540077No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10180.258301553107865No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9890.2509432573906469No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8350.21186816978886763No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7460.1892858139670602No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6620.1679721298206352No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5290.13422546325546225No Hit
ATGGTGGTCCAGCACAATCTGCAGGCCATGA4560.11570285679487864No Hit
ATGGTGGTTCAGCACAACCTGACTGCGATGA4560.11570285679487864No Hit
ATGGTTGTCCAGCACAACATGCAGGCTGCGA4400.11164310743365481No Hit
ATGATCATCAACCACAACACCAGCGCAATCA4190.10631468639704857No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)