FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007942430

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942430
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences429833
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG38920.9054679375478384No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT24930.5799926948372972No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA19690.45808488412941767No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC19120.44482391998753No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10070.23427703317334872No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9520.22148136601889573No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9200.21403661421994122No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8230.19146971032936047No Hit
GATGGCGAACACCGTCGTCACCGTGCCCACC7840.18239641907438472No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7830.18216377058066738No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6790.15796832723406531No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6290.14633590254819895No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5850.13609936882463655No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5540.1288872655193994No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5120.11911602878327164No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5040.11725484083353302No Hit
CGTCACGCACATCGCCAGGGTGTAGGCGGCA4920.1144630589089251No Hit
GGTGGTGATAACCATGGCCGTGGCCGTGGCC4640.10794890108483993No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT4490.10445917367908002No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4400.10236533723562408No Hit

[OK]Adapter Content

Adapter graph