FastQCFastQC Report
Wed 31 May 2023
EGAF00007942431

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942431
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences526564
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13020.2472633905850001No Hit
CTGACCAACACCGGAGAAGTCGCCAACGCCTTTGTTAGCAGAGG9370.17794608062837566No Hit
GTAGTTCGGGTCGATATCTGCGACACCTTCGGCGTCCAGCATTT6850.13008865019256918No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCTGGG6530.12401151616897471No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6340.1204032178424655No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT6030.11451599425710834No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)