FastQCFastQC Report
Wed 31 May 2023
EGAF00007942432

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942432
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences526564
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13150.24973222628208538No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG11010.20909139249929734No Hit
ACTAGCCCGGAAGAACCGATCTACACCCAGG9970.1893407069226153No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9910.18820124429319132No Hit
CCGGATTTTGAACAGAACATTGCGACCACCA7180.13635569465440098No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG6820.1295189188778572No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6590.12515097879839868No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA6280.11926375521304153No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)