FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942433

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942433
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences471025
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC17020.3613396316543708No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14450.30677777188047345No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC11470.24351149089751073No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT9820.20848150310493074No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8150.17302690939971338No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7950.16878085027334006No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT7480.15880261132636272No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7390.15689188471949472No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7160.1520089167241654No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6780.14394140438405606No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6020.12780637970383738No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5530.11740353484422271No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG4950.10508996337774004No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)