FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007942436

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942436
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences480862
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG39950.8307996888920314No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16880.35103626404249033No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8620.17926140971838073No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA6980.14515599070003452No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6600.13725351556163723No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5340.1110505716816883No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)