FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007942442

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942442
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences508905
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT87721.723700887198986No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44220.8689244554484629No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14290.2807989703382753No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA14050.2760829624389621No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11980.23540739430738547No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10830.21280985645650957No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8490.16682877943820557No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7690.15110875310716146No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA6530.1283147149271475No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6160.1210442027490396No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6030.11848969847024493No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5710.11220168793782728No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5510.10827168135506626No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5330.10473467543058136No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA5160.10139416983523447No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)