FastQCFastQC Report
Sun 21 May 2023
EGAF00007942443

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942443
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences487445
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT20720.4250735980469591No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT17430.3575788037624758No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC17260.3540912308055268No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16160.33152458226056275No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC14190.2911097662300362No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA11180.22935920975699822No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC10920.22402527464637037No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA9340.19161136128178566No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC8570.1758147073003108No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8420.17273743704417935No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA8350.171301377591318No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7960.1633004749253762No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG7180.14729866959349258No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT7130.14627291284144878No Hit
GTGCGGGTAGATCGGCAGGTTGCCCAGCAGAGTGCCGTCGAAGT6450.13232262101365283No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5610.11508990757931664No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5380.11037142651991506No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5260.1079096103150099No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5190.10647355086214855No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG5020.10298597790519956No Hit
CCAGGCAGAACCGTGGTGGTTACGGGATGCGCTACCAGAATGGC5000.10257567520438203No Hit
AACCAGGCGGCCAGCCGGGTTTTTCTTACCGGTAATGATGTCAC4900.1005241617002944No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)