FastQCFastQC Report
Wed 31 May 2023
EGAF00007942444

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942444
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences487445
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA42790.8778426283991013No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG17960.3684518253341402No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA17890.36701576588127893No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC17650.36209213347146857No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16340.3352173065679205No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG14310.29357158243494136No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA13940.28598098246981707No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12860.26382463662567057No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC9440.19366287478587327No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8960.1838156099662526No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8830.18114864241093867No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8700.17848167485562474No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8140.16699319923273395No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC6590.1351947399193755No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6170.12657838320220743No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5830.11960323728830945No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5610.11508990757931664No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5530.11344869677604653No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5230.10729415626378361No Hit
CGTTCTCGCCACGAGAACACCTCTCAGGTTC5160.10585809681092224No Hit
CTGATCGTGCTGCAGATGGGTGGTGGCCAGG5080.10421688600765215No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)