FastQCFastQC Report
Sun 21 May 2023
EGAF00007942447

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942447
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences463561
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC23060.49745340958363626No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA17580.37923811537208696No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17050.3678048843625758No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT16560.357234538712273No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA14630.3156003201304683No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT12840.2769862003058929No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT11990.2586498864227146No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA11410.24613804871419295No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA11300.24376511397636988No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT10600.2286646201902231No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT9520.20536671549159657No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT6880.1484162817838429No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6730.14518046168681145No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6720.14496474034700935No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA6100.13159001727927933No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA5730.12360832770660173No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5680.12252972100759124No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5580.12037250760957026No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5030.10850783392045492No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA4990.10764494856124654No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG4930.10635062052243394No Hit
TTCATCACCATCACCGCCTTCGTCACCGTCATCGCCGTCATCGC4930.10635062052243394No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT4880.10527201382342347No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)