FastQCFastQC Report
Wed 31 May 2023
EGAF00007942448

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942448
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences463561
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC30870.6659317759690743No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA19090.41181203768220365No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG17470.3768651806342639No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17350.3742765245566387No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT16530.3565873746928668No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC13760.2968325635676858No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG13540.29208669409203963No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG12660.2731032161894551No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG12350.2664158546555901No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA12270.26469008393717336No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11190.24139217923854683No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA10530.2271545708116084No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC9710.20946542094783643No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7820.16869408772524003No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7340.15833946341473937No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7330.15812374207493726No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7190.15510364331770793No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6290.13568872273551918No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5980.12900136120165415No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5960.12856991852204994No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5580.12037250760957026No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC5500.11864673689115349No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5220.11260653937669475No Hit
GCCGAGGGTCTGAAGGACGCGATTAAAGACC4890.10548773516322554No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA4820.10397768578461086No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT4820.10397768578461086No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC4780.10311480042540248No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)