FastQCFastQC Report
Wed 31 May 2023
EGAF00007942458

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942458
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences513332
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC25310.49305322870968493No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT20920.4075335260611067No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT17430.33954633648399085No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG17180.33467619396414017No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA14920.29065010558468984No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG13070.2546110509377946No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12770.2487668799139738No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT11360.22129927610201583No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9580.18662386136067885No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7930.15448092072966424No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7470.14551985849313892No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG7430.14474063568996284No Hit
ATGTCCAACATGGACATCGATGGTATTAACA7260.14142893877646434No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6700.1305198195319988No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC6450.12564967701214808No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6390.12448084280738392No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6000.11688342047641682No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5910.11513016916927057No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5880.11454575206688848No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5730.11162366655497807No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5580.10870158104306765No Hit
ATGAGCACCAACCCGAAACCGCAGCGTAAAA5340.10402624422401097No Hit

[OK]Adapter Content

Adapter graph