FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942459

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942459
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences432442
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT23860.5517502925247779No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG16140.373229242303014No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG15730.36374820207102915No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG15710.3632857123036153No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT13820.3195804292830021No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG12760.2950684716100656No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT9640.2229200678934979No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8980.20765790556883928No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8930.20650168115030457No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC8240.19054578417452514No Hit
TTGTGGCACCGGTGGCAGCAGGGTGGCCATGACACGCTGTTCCA8190.1893895597559904No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC7680.17759607068693606No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7130.1648776020830539No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6050.13990315464270353No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG6000.13874693022416879No Hit
CGGGTCCTGGGACCACGGAGCCCACGGATGACGGTAGCACGGGT5900.13643448138709932No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA5190.120016094643906No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5090.11770364580683651No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA4850.11215376859786978No Hit
CGGAGCCTGCGGTGGCGGCGGCTCTTGATAACCCTGATACGGCG4810.11122878906304198No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT4800.11099754417933504No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC4690.10845385045855861No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG4680.10822260557485167No Hit
GGACTGGTCCGGCACGTGCAGAACCGGCAGGTGCATGCGAGGCG4580.10591015673778219No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)