FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942460

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942460
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences432442
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG35460.8199943576248375No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT23740.5489753539202945No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA18890.4368215853224247No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT18120.41901572927698977No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC16910.3910350983484491No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC16550.3827102825349989No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC16240.3755416911400835No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC14850.34339865230481775No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG13950.32258661277119244No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8850.20465172208064897No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC8190.1893895597559904No Hit
CCGTGGCAGCCGCTGCCGGGTCCGCAGGTGA8000.18499590696555837No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7210.1667275611527095No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6390.14776548068873976No Hit
CCGCCAGCCCCGCAGGCGCCTTACCAGGGTT6210.1436030727820147No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG6010.13897817510787575No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5990.13851568534046185No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5500.12718468603882138No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5420.1253347269691658No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5250.12140356394614768No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4890.11307874813269757No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG4820.11146003394674894No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4770.1103038095282142No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4720.10914758510967945No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA4650.10752887092373081No Hit
CCGCTGCCGCCGGCAACGCTGACCGTTCCGC4590.10614140162148913No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4570.10567891185407523No Hit
AGCCCGACCCAACCGATCTCTCACGAAGAAC4410.10197899371476406No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)