FastQCFastQC Report
Wed 31 May 2023
EGAF00007942463

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942463
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences436613
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA14210.325459846591833No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG12940.29637230224477973No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT12050.2759881176236163No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC6670.1527668667675951No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT6470.14818615112238986No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAG4620.10581453140424128No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)