FastQCFastQC Report
Wed 31 May 2023
EGAF00007942465

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942465
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences485244
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGC10050.20711229814279003No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC9260.19083182893554582No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT8820.1817642258327769No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCG8040.16568983851423202No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT7470.15394317085837228No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC7250.14940936930698784No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG5590.11519977578290509No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT5410.11149030178631782No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG5150.10613217268013618No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)