FastQCFastQC Report
Sun 21 May 2023
EGAF00007942466

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942466
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences485244
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT17980.3705352358813298No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGGTG9490.19557171237562956No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC8680.1788790793909868No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAGAA8340.1718722951752108No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC7630.15724048107756097No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG7560.15579790785666592No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT6990.1440512402008062No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT6940.14302083075730973No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6190.1275646891048627No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCACC4990.10283486246094749No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC4980.10262878057224818No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT4920.10139228924005243No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)