FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942467

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942467
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences476058
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG10900.22896369770070032No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT10520.22098147704691448No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT8670.18212066596927265No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT7930.16657634153821593No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT7080.14872137428632645No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT6940.14578055615072114No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT5340.11217120602951743No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)