FastQCFastQC Report
Sun 21 May 2023
EGAF00007942469

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942469
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences496329
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT10310.2077251178149977No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC8310.16742926566853839No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG7280.14667690181311188No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGG7270.14647542255237958No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC6820.13740885581942622No Hit
GTGCGGGTAGATCGGCAGGTTGCCCAGCAGAGTGCCGTCGA6730.13559554247283556No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG6210.12511862091475612No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTA5300.10678400818811716No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)