FastQCFastQC Report
Wed 31 May 2023
EGAF00007942470

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942470
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences496329
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT16370.3298215498187694No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC10340.20832955559719463No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAAAC7710.15534051002460061No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC7430.14969909072409632No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACCAC7150.144057671423592No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG6850.13801329360162312No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC6290.12673045500061453No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT5580.11242542748862146No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5440.1096047178383693No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTACC5320.10718696670958175No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT5180.1043662570593296No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC5050.10174702666980974No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)