FastQCFastQC Report
Wed 31 May 2023
EGAF00007942472

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942472
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences483077
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC21050.435748338256634No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT11270.23329614119488198No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTACC8220.17015920857337444No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGGAT6890.14262736582366786No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5280.10929934565297045No Hit
CAGGGCCGTTATACTACCAACGACGGTTACGTT5060.10474520625076333No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)